QIIME 2

  • Library
  • View
  • Forum
QIIME 2 library logo
  • Quickstart
  • Plugins
  • Docs
  • Videos
  • Workshops
  • Resources
  • Home
  • Quickstart
  • Docs
  • Videos
  • Workshops
  • Resources

q2-boots

caporaso-lab

  • Introduction
  • Overview
  • Tutorials
  • Releases
  • Discussions
  • Introduction
  • Overview
  • Tutorials
  • Releases
Quickstart install for:
[Fresh Install (🍏 Silicon)]
[Fresh Install (Other Archs)]
[Update Existing]
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.4 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
conda activate q2-boots-amplicon-2025.4
conda config --env --set subdir osx-64
conda env create --name q2-boots-amplicon-2025.4 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
[Fresh Install (🍏 Silicon)]
[Fresh Install (Other Archs)]
[Update Existing]
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.4 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
conda activate q2-boots-amplicon-2025.4
conda config --env --set subdir osx-64
conda env create --name q2-boots-amplicon-2025.4 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
[Fresh Install (🍏 Silicon)]
[Fresh Install (Other Archs)]
[Update Existing]
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.4 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
conda activate q2-boots-amplicon-2025.4
conda config --env --set subdir osx-64
conda env create --name q2-boots-amplicon-2025.4 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
[Fresh Install (🍏 Silicon)]
[Fresh Install (Other Archs)]
[Update Existing]
CONDA_SUBDIR=osx-64 conda env create \
  --name q2-boots-amplicon-2025.4 \
  --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml
conda activate q2-boots-amplicon-2025.4
conda config --env --set subdir osx-64
conda env create --name q2-boots-amplicon-2025.4 --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml

Activate your environment (amplicon) and run:

conda env update --file https://raw.githubusercontent.com/caporaso-lab/q2-boots/refs/heads/main/environment-files/q2-boots-qiime2-amplicon-2025.4.yml

Showing the last 30 topics from:

  • https://forum.qiime2.org/tag/q2-boots
TopicRepliesViewsActivity
Rarefaction vs Rarefying and when to use them in your analysis pipeline
zippyzocolinbrislawngregcaporasoarwqiimejwdebelius
14267Wed Jul 09 2025
q2-boots and new QIIME 2 Library installation questions
arwqiimelizgehretgregcaporasocolinvwoodsystem
12132Fri May 09 2025
q2-boots: bootstrapped and rarefaction-based diversity analysis 🥾
gregcaporasojphagen
4249Tue Apr 15 2025
q2-boots and Parsl testing
colinbrislawncherman2gregcaporasoOddant1
587Thu Sep 12 2024
Links
Documentation Documentation
GitHub Source Code
Stars
3
Last Commit
4ce6a19 Passed
Available Distros
2025.4
2025.4/amplicon
2024.10
2024.10/amplicon
2024.5
2024.5/amplicon